PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00024660-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 82aa    MW: 9484.88 Da    PI: 9.5198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00024660-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.86.1e-091446132
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg 32
                      +g W+ eEd +l+++++++G+g +W t ++++g
  PSME_00024660-RA 14 KGHWSLEEDIKLKEYIEKYGTGgNWITLPQKVG 46
                      789****************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-10544IPR009057Homeodomain-like
SuperFamilySSF466893.35E-7846IPR009057Homeodomain-like
PROSITE profilePS500906.748948IPR017877Myb-like domain
PfamPF002494.6E-71446IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MGRTTCCDKA NVKKGHWSLE EDIKLKEYIE KYGTGGNWIT LPQKVGKSSF LDYGIHVEIK  60
HRLFLFFNSI VQYSFSRPPS SQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909458.11e-22PREDICTED: uncharacterized protein LOC105035563, partial
SwissprotQ9FKL21e-22MYB36_ARATH; Transcription factor MYB36
TrEMBLB9SCI38e-22B9SCI3_RICCO; R2r3-myb transcription factor, putative
STRINGBra006811.1-P3e-20(Brassica rapa)
STRINGscaffold_802340.13e-20(Arabidopsis lyrata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.19e-24myb domain protein 36